Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_0941Putative ribosome associated protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Transport and binding proteins; Belongs to the UPF0307 family. (173 aa)    
Predicted Functional Partners:
rluD
23S rRNA pseudouridine(1911,1915,1917) synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
    
 
 0.845
rpmG
50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.836
sprT
Conserved protein of unknown function, SprT family; Homologs of previously reported genes of unknown function; Unknown function; Belongs to the SprT family.
      
 0.770
pmbA
Regulatory protease; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Proteinfate : Protein and peptide secretion and trafficking.
  
    0.765
PP_2295
Putative antirestriction protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
      
 0.717
PP_5353
Homologs of previously reported genes of unknown function.
  
     0.658
rplV
50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).
  
 
   0.644
rpmF
50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
   0.638
rplX
50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
  
 
   0.625
sodA
Superoxide dismutase (Mn); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
       0.618
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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