Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
mlaDPhospholipid ABC transporter binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins. (161 aa)    
Predicted Functional Partners:
mlaF
Phospholipid ABC transporter ATP-binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
 
 0.999
mlaE
Phospholipid ABC transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
 0.999
ttg2D
Toluene tolerance protein; Function of strongly homologous gene; regulator.
 
 0.999
ttg2E
Toluene-tolerance protein; Function of strongly homologous gene; regulator.
  
 0.997
PP_0142
Putative ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.991
PP_0141
Putative ABC transporter, ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.984
PP_1737
Homologs of previously reported genes of unknown function.
 
   
 0.902
PP_0140
Homologs of previously reported genes of unknown function.
     
  0.900
lptC
Conserved exported protein of unknown function; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA.
  
  
 0.900
vacJ
VacJ lipoprotein.
 
   
 0.833
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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