Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ttg2EToluene-tolerance protein; Function of strongly homologous gene; regulator. (100 aa)    
Predicted Functional Partners:
ttg2D
Toluene tolerance protein; Function of strongly homologous gene; regulator.
  
 
 0.999
mlaF
Phospholipid ABC transporter ATP-binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
  
 0.998
mlaD
Phospholipid ABC transporter binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
  
 0.997
mlaE
Phospholipid ABC transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
  
 0.996
PP_0141
Putative ABC transporter, ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 0.961
PP_0142
Putative ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 0.931
PP_0140
Homologs of previously reported genes of unknown function.
  
 0.907
vacJ
VacJ lipoprotein.
     
 0.793
ttg2F
Putative BolA family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the BolA/IbaG family.
     
 0.738
kdsC
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
  
  
 0.720
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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