Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_0969Transcriptional regulator, GntR family. (216 aa)    
Predicted Functional Partners:
PP_3649
Transcriptional regulator, GntR family.
  
  
 0.787
PP_0970
Cyanate MFS transporter.
       0.786
PP_0163
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
  
 0.778
PP_4345
Transcriptional regulator, GntR family.
  
  
 0.778
PP_3738
Putative Transcriptional regulator VanR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.769
PP_4283
Transcriptional regulator, GntR family.
  
  
 0.757
PP_2253
Transcriptional regulator, GntR family.
  
  
 0.735
PP_0204
Transcriptional regulator, GntR family.
  
    0.681
PP_1697
Transcriptional regulator, GntR family; Function of strongly homologous gene; regulator; Transcription.
  
    0.663
csiR
DNA-binding transcriptional repressor; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription.
  
  
 0.646
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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