STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0970Cyanate MFS transporter. (434 aa)    
Predicted Functional Partners:
PP_0969
Transcriptional regulator, GntR family.
       0.782
PP_1289
Conserved protein of unknown function, DUF328 family; Homologs of previously reported genes of unknown function; Unknown function; Belongs to the UPF0246 family.
  
    0.642
PP_0971
Homologs of previously reported genes of unknown function.
  
    0.596
PP_0972
UPF0213 protein PP_0972; Belongs to the UPF0213 family.
       0.564
PP_0968
Homologs of previously reported genes of unknown function.
  
    0.563
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.