STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcD-IArginine/ornithine antiporter; Function experimentally demonstrated in the studied genus; transporter; Transport and binding proteins. (475 aa)    
Predicted Functional Partners:
arcA
Arginine deiminase; Function experimentally demonstrated in the studied species; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
  
 0.958
arcC
Carbamate kinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Aminoacidbiosynthesis : Glutamate family; Belongs to the carbamate kinase family.
 
  
 0.907
arcD-II
Arginine/ornithine antiporter; Function experimentally demonstrated in the studied genus; transporter; Transport and binding proteins.
  
 
 
0.901
arcB
Ornithine carbamoyltransferase, catabolic; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
  
 0.893
hisP
Histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
   
  
 0.755
PP_0997
Sigma-54 dependent transcriptional regulator/sensory box protein.
     
 0.720
amaD
D-lysine oxidase; Function experimentally demonstrated in the studied strain; enzyme; Energymetabolism : Amino acids and amines.
  
  
 0.682
treSA
Trehalose synthase A; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Sugars.
   
 0.543
treSB
Fused trehalose synthase B/maltokinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Biosynthesis and degradation of polysaccharides.
   
 0.543
glgE
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
   
 0.543
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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