Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yeaDPutative glucose-6-phosphate 1-epimerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energy metabolism; Belongs to the glucose-6-phosphate 1-epimerase family. (284 aa)    
Predicted Functional Partners:
PP_4798
Putative Membrane-bound lytic murein transglycosylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
      0.899
oprB-I
Carbohydrate-selective porin; Function experimentally demonstrated in the studied strain; transporter.
 
     0.644
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
    
   0.595
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
    0.544
gtsD
Mannose/glucose ABC transporter - ATP binding subunit; Function experimentally demonstrated in the studied strain; transporter; Fattyacidandphospholipidmetabolism : Biosynthesis; Belongs to the ABC transporter superfamily.
       0.478
gtsB
Mannose/glucose ABC transporter, permease protein; Function experimentally demonstrated in the studied strain; transporter; Transport and binding proteins.
  
    0.439
gtsC
Mannose/glucose ABC transporter, permease protein; Function experimentally demonstrated in the studied strain; transporter; Transport and binding proteins.
       0.427
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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