STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1028Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (292 aa)    
Predicted Functional Partners:
PP_3227
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.774
PP_3934
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.767
PP_0079
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.760
PP_5261
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.739
PP_3143
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.726
PP_2390
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.624
PP_4156
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.620
PP_1688
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.592
PP_1029
Homologs of previously reported genes of unknown function.
       0.560
xseA
Exodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
  
    0.554
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.