Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xcpXType II secretion system protein K. (321 aa)    
Predicted Functional Partners:
xcpQ
Type II secretion pathway protein XcpQ.
 
  
 0.990
xcpT
Type II secretion pathway protein XcpT.
 
 
 0.987
xcpU
Type II secretion pathway protein XcpU.
  
 
 0.963
gspG
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
 
 
 0.926
xcpP
Type II secretion pathway protein XcpP.
  
  
 0.899
xcpW
Type II secretion pathway protein XcpW.
  
 
 0.883
gspN
Type II secretion pathway protein GspN.
     
 0.879
xcpS
Type II secretion pathway protein XcpS.
 
   
 0.861
xcpY
Type II secretion pathway protein XcpY.
  
  
 0.767
gspF
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
 
   
 0.764
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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