Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
upxBPutative phosphatase; Function experimentally demonstrated in the studied species; enzyme; Centralintermediarymetabolism : Phosphorus compounds. (691 aa)    
Predicted Functional Partners:
uxpA
Lipoprotein UxpA.
  
  
 0.599
gspG
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
  
  
 0.550
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
     
 0.528
xcpP
Type II secretion pathway protein XcpP.
       0.497
xcpQ
Type II secretion pathway protein XcpQ.
       0.497
xcpY
Type II secretion pathway protein XcpY.
       0.494
rdoA
Serine/threonine protein kinase; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response.
       0.488
modR
Molybdate transport regulator.
       0.488
PP_0361
Putative Competence protein ComF; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.488
xcpV
Type II secretion pathway protein XcpV.
       0.486
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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