STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxpALipoprotein UxpA. (550 aa)    
Predicted Functional Partners:
xcpP
Type II secretion pathway protein XcpP.
       0.869
xcpQ
Type II secretion pathway protein XcpQ.
 
     0.825
xcpU
Type II secretion pathway protein XcpU.
     
 0.798
xcpV
Type II secretion pathway protein XcpV.
     
 0.798
xcpW
Type II secretion pathway protein XcpW.
     
 0.798
gspG
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
     
 0.797
xcpY
Type II secretion pathway protein XcpY.
       0.794
xcpZ
Type II secretion pathway protein XcpZ.
       0.794
gspN
Type II secretion pathway protein GspN.
       0.785
gspF
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
       0.784
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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