xcpV protein (Pseudomonas putida KT2440) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

xcpV

Type II secretion pathway protein XcpV. (135 aa)

Predicted Functional Partners:

xcpU

0.976

xcpP

0.967

xcpY

0.934

xcpX

0.927

gspE

0.877

gspF

0.869

xcpS

0.851

xcpT

0.847

xcpZ

0.808

xcpQ

0.807

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
gspE	gspF	PP_1047	PP_1048	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.	0.999
gspE	xcpP	PP_1047	PP_1045	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.	Type II secretion pathway protein XcpP.	0.825
gspE	xcpQ	PP_1047	PP_1046	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.	Type II secretion pathway protein XcpQ.	0.956
gspE	xcpS	PP_1047	PP_3424	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.	Type II secretion pathway protein XcpS.	0.986
gspE	xcpT	PP_1047	PP_3423	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.	Type II secretion pathway protein XcpT.	0.858
gspE	xcpU	PP_1047	PP_1050	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.	Type II secretion pathway protein XcpU.	0.891
gspE	xcpV	PP_1047	PP_1051	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.	Type II secretion pathway protein XcpV.	0.877
gspE	xcpX	PP_1047	PP_1042	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.	Type II secretion system protein K.	0.561
gspE	xcpY	PP_1047	PP_1053	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.	Type II secretion pathway protein XcpY.	0.982
gspE	xcpZ	PP_1047	PP_1054	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.	Type II secretion pathway protein XcpZ.	0.773
gspF	gspE	PP_1048	PP_1047	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.	0.999
gspF	xcpP	PP_1048	PP_1045	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.	Type II secretion pathway protein XcpP.	0.837
gspF	xcpQ	PP_1048	PP_1046	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.	Type II secretion pathway protein XcpQ.	0.964
gspF	xcpS	PP_1048	PP_3424	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.	Type II secretion pathway protein XcpS.	0.941
gspF	xcpT	PP_1048	PP_3423	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.	Type II secretion pathway protein XcpT.	0.843
gspF	xcpU	PP_1048	PP_1050	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.	Type II secretion pathway protein XcpU.	0.879
gspF	xcpV	PP_1048	PP_1051	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.	Type II secretion pathway protein XcpV.	0.869
gspF	xcpX	PP_1048	PP_1042	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.	Type II secretion system protein K.	0.591
gspF	xcpY	PP_1048	PP_1053	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.	Type II secretion pathway protein XcpY.	0.965
gspF	xcpZ	PP_1048	PP_1054	Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.	Type II secretion pathway protein XcpZ.	0.773