Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xcpVType II secretion pathway protein XcpV. (135 aa)    
Predicted Functional Partners:
gspE
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
  
 
 0.880
xcpY
Type II secretion pathway protein XcpY.
  
  
 0.878
gspF
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
  
  
 0.875
xcpZ
Type II secretion pathway protein XcpZ.
  
    0.870
xcpU
Type II secretion pathway protein XcpU.
       0.869
xcpW
Type II secretion pathway protein XcpW.
       0.869
gspN
Type II secretion pathway protein GspN.
  
    0.861
gspG
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
       0.810
xcpQ
Type II secretion pathway protein XcpQ.
  
  
 0.805
xcpP
Type II secretion pathway protein XcpP.
  
  
 0.803
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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