STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspNType II secretion pathway protein GspN. (214 aa)    
Predicted Functional Partners:
xcpX
Type II secretion system protein K.
     
 0.866
xcpV
Type II secretion pathway protein XcpV.
  
    0.792
xcpZ
Type II secretion pathway protein XcpZ.
  
    0.780
xcpU
Type II secretion pathway protein XcpU.
  
    0.777
xcpW
Type II secretion pathway protein XcpW.
       0.776
xcpY
Type II secretion pathway protein XcpY.
       0.776
xcpP
Type II secretion pathway protein XcpP.
       0.764
uxpA
Lipoprotein UxpA.
       0.756
xcpQ
Type II secretion pathway protein XcpQ.
  
    0.753
gspG
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
       0.753
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.