STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1056Putative Iron-chelator utilization protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (253 aa)    
Predicted Functional Partners:
PP_1057
Transcriptional regulator, PadR family.
   
 0.953
sodA
Superoxide dismutase (Mn); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
    0.782
PP_0945
Homologs of previously reported genes of unknown function.
   
    0.780
PP_0685
Homologs of previously reported genes of unknown function.
   
    0.726
PP_1058
Homologs of previously reported genes of unknown function.
     
 0.646
pvdD
Non-ribosomal peptide synthetase; Function experimentally demonstrated in the studied genus; enzyme; Fattyacidandphospholipidmetabolism : Biosynthesis.
  
  
 0.609
fatB
Ferric anguibactin-binding protein.
 
  
 0.589
paxB
Toxin secretion ATP-binding protein.
   
   0.523
PP_0804
Protein secretion ABC efflux system, permease and ATP-binding protein.
   
   0.523
cyaB
Cyclolysin secretion/processing ATP-binding protein CyaB.
   
   0.523
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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