STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1058Homologs of previously reported genes of unknown function. (1049 aa)    
Predicted Functional Partners:
PP_1692
Homologs of previously reported genes of unknown function; Unknown function.
      
 0.837
PP_0903
Homologs of previously reported genes of unknown function.
  
  
 0.836
PP_5152
Homologs of previously reported genes of unknown function.
      
 0.835
PP_0900
PAP2 family protein.
      
 0.834
pagL-I
Lipid A 3-O-deacylase; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
      
 0.760
colR
DNA-binding response regulator; Function of strongly homologous gene; regulator; Regulatory functions.
   
  
 0.646
PP_1056
Putative Iron-chelator utilization protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.600
PP_2323
Homologs of previously reported genes of unknown function.
      
 0.589
PP_0904
InaA protein.
      
 0.587
PP_0036
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Biologicalprocesses : Control.
  
  
 0.582
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.