STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_1060Putative Glutamate synthase, large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the glutamate synthase family. (539 aa)    
Predicted Functional Partners:
gltD
Glutamate synthase (NADPH) beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Aminoacidbiosynthesis : Glutamate family.
 
 
 0.985
pydX
NADP-dependent dihydropyrimidine dehydrogenase subunit; Function of strongly homologous gene; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
 
 0.962
PP_1061
Putative ATP-dependent DNA helicase lhr; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.920
gltB
L-glutamate synthase(NADPH) alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Aminoacidbiosynthesis : Glutamate family.
 
 
0.910
kefB-III
Glutathione-regulated potassium/H+ antiporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Cations and iron carrying compounds; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
     
 0.861
PP_5245
Transcriptional regulator, AraC family.
      
 0.852
PP_1683
Transcriptional regulator, MarR family.
  
   
 0.810
wbpL
Glycosyl transferase WbpL.
     
 0.766
PP_4515
Transcriptional regulator, MarR family.
      
 0.766
fadH
2,4-dienoyl-CoA reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Biosynthesis.
 
 
 0.760
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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