STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1067Sensor histidine kinase. (635 aa)    
Predicted Functional Partners:
dctD-II
C4-dicarboxylate transport transcriptional regulatory protein; Function of strongly homologous gene; regulator.
 0.999
glmP
Membrane protein required for efficient alginate biosynthesis; Function of strongly homologous gene; Unknown function.
  
    0.724
dctD-III
C4-dicarboxylate transport transcriptional regulatory protein; Function of strongly homologous gene; regulator.
 
 0.722
dctD-I
C4-dicarboxylate transport transcriptional regulatory protein; Function of strongly homologous gene; regulator.
 
 0.693
gltJ
Glutamate / aspartate ABC transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
 
    0.666
gltK
Glutamate / aspartate ABC transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
  
    0.599
gltL
Glutamate / aspartate ABC transporter - ATP binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
  
    0.593
PP_3761
Sensor histidine kinase/response regulator.
  
 
0.550
PP_1421
Putative Sensor histidine kinase TctE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   0.501
PP_3453
Putative Sensor protein RstB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
   0.499
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.