STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1067Sensor histidine kinase. (635 aa)    
Predicted Functional Partners:
dctD-II
C4-dicarboxylate transport transcriptional regulatory protein; Function of strongly homologous gene; regulator.
 0.999
PP_3551
DNA-binding response regulator, LuxR family.
 
 
 0.978
glmP
Membrane protein required for efficient alginate biosynthesis; Function of strongly homologous gene; Unknown function.
  
    0.738
dctD-III
C4-dicarboxylate transport transcriptional regulatory protein; Function of strongly homologous gene; regulator.
 
 0.724
dctD-I
C4-dicarboxylate transport transcriptional regulatory protein; Function of strongly homologous gene; regulator.
 
 0.696
gltJ
Glutamate / aspartate ABC transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
 
  
 0.685
gltK
Glutamate / aspartate ABC transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
  
    0.607
gltL
Glutamate / aspartate ABC transporter - ATP binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
       0.590
gltI
Glutamate / aspartate ABC transporter - periplasmic binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Amino acids, peptides and amines.
  
  
 0.548
PP_2599
Chemotaxis sensory transducer family protein.
 
 
 
 0.542
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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