STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltIGlutamate / aspartate ABC transporter - periplasmic binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Amino acids, peptides and amines. (306 aa)    
Predicted Functional Partners:
gltJ
Glutamate / aspartate ABC transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
 0.999
gltL
Glutamate / aspartate ABC transporter - ATP binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
 
 0.994
gltK
Glutamate / aspartate ABC transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
 
 0.988
dppA-III
Dipeptide ABC transporter - periplasmic binding protein; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines.
   
  
 0.784
hisQ
Histidine / lysine / arginine / ornithine ABC transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
 
 
 0.780
PP_5297
Putative Amino acid transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.744
yhdZ
Putative amino acid ABC transporter - ATP-binding subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
 
 
 0.716
aroP-II
Aromatic amino acid transport protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aromatic amino acid family.
      
 0.701
dppA-I
Dipeptide ABC transporter - periplasmic binding protein; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines.
   
  
 0.678
dppA-II
Dipeptide ABC transporter - periplasmic binding protein; Function experimentally demonstrated in the studied genus; transporter; Energymetabolism : Amino acids and amines.
   
  
 0.667
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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