STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybaKCys-tRNAPro deacylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Maintain; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (156 aa)    
Predicted Functional Partners:
glpF
Aquaglyceroporin; Function of homologous gene experimentally demonstrated in an other organism; transporter; Fattyacidandphospholipidmetabolism : Biosynthesis; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
  
 0.853
PP_1072
Leucine-rich repeat domain protein.
      
 0.839
glpR
DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate; Function of homologous gene experimentally demonstrated in an other organism; regulator; Energymetabolism : Anaerobic.
     
 0.838
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
  
 0.816
glpD
Glycerol-3-phosphate dehydrogenase (aerobic); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Aerobic; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
  
 0.814
PP_5410
Transcriptional regulator, DeoR family.
     
 0.766
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.