Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_1122OmpA family protein. (264 aa)    
Predicted Functional Partners:
PP_4839
Putative iron-regulated membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Regulatory functions.
      
 0.819
PP_0412
Polyamine ABC transporter, periplasmic polyamine-binding protein.
   
  
 0.766
PP_3814
Polyamine ABC transporter, periplasmic polyamine-binding protein.
   
  
 0.766
PP_1121
OmpA family protein.
 
    
0.758
tolC
Agglutination protein.
 
 
 0.734
tolB
Component of the Tol biopolymer transport system; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.639
PP_1123
Homologs of previously reported genes of unknown function.
       0.615
fecA
Outer membrane ferric citrate porin; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Porins.
      
 0.527
PP_1119
Homologs of previously reported genes of unknown function; Unknown function; Belongs to the UPF0225 family.
  
    0.510
PP_1120
Homologs of previously reported genes of unknown function.
       0.496
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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