Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_1128OmpA family protein. (344 aa)    
Predicted Functional Partners:
pdxH
Pyridoxine/pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
       0.839
PP_4839
Putative iron-regulated membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Regulatory functions.
      
 0.819
PP_0412
Polyamine ABC transporter, periplasmic polyamine-binding protein.
   
  
 0.766
PP_3814
Polyamine ABC transporter, periplasmic polyamine-binding protein.
   
  
 0.766
estC
Carboxylesterase.
     
 0.648
oprL
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
   
 0.600
slyB
Outer membrane lipoprotein; Function of homologous gene experimentally demonstrated in an other organism; lipoprotein; Cellenvelope : Surface structures.
  
  
 0.595
PP_4335
Flagellar motor protein; Function of strongly homologous gene; cell process.
  
 
 0.577
fecA
Outer membrane ferric citrate porin; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transportandbindingproteins : Porins.
      
 0.527
PP_1600
Skp-like protein.
 
 
 0.525
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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