Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yfdCPutative inner membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component; Transport and binding proteins. (298 aa)    
Predicted Functional Partners:
cynT
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
  
  
 0.782
rbbA
Ribosome-associated ATPase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Proteinsynthesis : Ribosomal proteins.
     
 0.562
PP_0983
Homologs of previously reported genes of unknown function.
      
 0.555
PP_1703
Assimilatory nitrate reductase/sulfite reductase; Function of strongly homologous gene; enzyme; Centralintermediarymetabolism : Nitrogen metabolism; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
  
 0.532
PP_3175
Putative Dioxygenase, ferredoxin reductase component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.530
PP_1154
Sensory box protein.
  
  
 0.529
cysG
Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
     
 0.503
yegS
Lipid kinase; Probably phosphorylates lipids; the in vivo substrate is unknown.
  
  
 0.483
yaiW
Lipoprotein required for swarming; Function of homologous gene experimentally demonstrated in an other organism; lipoprotein; Cell envelope.
  
     0.435
PP_1161
Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the UPF0149 family.
  
     0.418
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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