Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_1161Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the UPF0149 family. (223 aa)    
Predicted Functional Partners:
PP_1159
Homologs of previously reported genes of unknown function.
       0.773
PP_1160
Asparaginase family protein.
       0.773
yaiW
Lipoprotein required for swarming; Function of homologous gene experimentally demonstrated in an other organism; lipoprotein; Cell envelope.
  
     0.709
PP_3145
Homologs of previously reported genes of unknown function.
  
     0.539
secA
Protein translocation complex, ATPase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.
   
 
 0.508
ydcP
Putative peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.501
ybhN
Phospholipid modification enzyme; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
     0.486
gstA
Protein GstA; Belongs to the GST superfamily.
       0.461
ycfJ
Putative regulator of flagellation; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Unknown function.
  
     0.445
yneJ
Putative DNA-binding transcriptional regulator, LysR-type; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Transcription; Belongs to the LysR transcriptional regulatory family.
  
     0.437
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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