STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1161Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the UPF0149 family. (223 aa)    
Predicted Functional Partners:
PP_1159
Homologs of previously reported genes of unknown function.
       0.773
PP_1160
Asparaginase family protein.
       0.773
yaiW
Lipoprotein required for swarming; Function of homologous gene experimentally demonstrated in an other organism; lipoprotein; Cell envelope.
  
     0.709
PP_3145
Homologs of previously reported genes of unknown function.
  
     0.539
ydcP
Putative peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.491
ybhN
Phospholipid modification enzyme; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
     0.486
gstA
Protein GstA; Belongs to the GST superfamily.
  
    0.464
ycfJ
Putative regulator of flagellation; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Unknown function.
  
     0.445
yneJ
Putative DNA-binding transcriptional regulator, LysR-type; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Transcription; Belongs to the LysR transcriptional regulatory family.
  
     0.437
yfdC
Putative inner membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component; Transport and binding proteins.
  
     0.418
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.