Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1164Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (298 aa)    
Predicted Functional Partners:
PP_3974
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.724
gstA
Protein GstA; Belongs to the GST superfamily.
 
    0.667
PP_2701
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.648
PP_2390
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.618
PP_1163
Oxidoreductase, FAD-binding.
 
    0.610
PP_4464
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.597
GbpR
Galactose-binding protein regulator; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.550
PP_2833
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.528
PP_3660
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.520
PP_5479
Transcriptional regulator HTH, LysR family; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.520
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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