STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1166Putative permease of the drug/metabolite transporter (DMT) superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins. (307 aa)    
Predicted Functional Partners:
PP_1165
Homologs of previously reported genes of unknown function.
     
 0.732
PP_1167
Putative TRAP dicarboxylate transporter, DctM subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.634
PP_1168
Putative TRAP dicarboxylate transporter, DctQ subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.608
dctP
TRAP dicarboxylate transporter, DctP subunit.
       0.608
gnl
Gluconolactonase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Sugars.
  
    0.516
PP_3399
Minor curlin subunit CsgB, nucleation component of curlin monomers; Function of strongly homologous gene; factor; Cell envelope.
 
    0.497
PP_1474
Homologs of previously reported genes of unknown function.
  
     0.450
udh
Uronate dehydrogenase; Catalyzes the oxidation of beta-D-galacturonate and beta-D- glucuronate to galactarate and D-glucarate, respectively. Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
    0.447
PP_0693
Homologs of previously reported genes of unknown function.
  
    0.414
PP_1936
Homologs of previously reported genes of unknown function.
  
    0.407
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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