STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oprHOuter membrane protein H1. (201 aa)    
Predicted Functional Partners:
oprF
Outer membrane porin F.
  
 
 0.899
oprG
Outer membrane protein OprG.
   
  
 0.871
oprE
Outer-membrane porin E; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Porins.
      
 0.861
oprC
Outer membrane copper receptor OprC.
      
 0.852
oprP
Porin P; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
      
 0.812
phoQ
Sensor protein; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription.
  
  
 0.778
oprI
Major outer membrane lipoprotein.
   
  
 0.775
oprD
Basic-amino-acid specific porin OprD; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Porins.
   
  
 0.769
oprL
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.716
phoP
Two component system DNA-binding transcriptional dual regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription.
  
  
 0.624
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.