STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
phoQSensor protein; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription. (448 aa)    
Predicted Functional Partners:
phoP
Two component system DNA-binding transcriptional dual regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription.
 0.999
colR
DNA-binding response regulator; Function of strongly homologous gene; regulator; Regulatory functions.
 
 
 0.910
ompR
Two-component system DNA-binding response transcriptional dual regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription.
 
 
 0.844
phoB
Two-component system DNA-binding transcriptional dual response regulator PhoB; Function experimentally demonstrated in the studied strain; regulator; Centralintermediarymetabolism : Phosphorus compounds.
 
 
 0.833
dctB
C4-dicarboxylate transport sensor protein.
    
 
 0.829
PP_2347
DNA-binding response regulator.
 
 
 0.785
oprH
Outer membrane protein H1.
  
  
 0.778
lpxA
Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
      
 0.775
rlpA
RlpA-like lipoprotein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
   
 0.757
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
      
 0.692
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.