STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoQSensor protein; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription. (448 aa)    
Predicted Functional Partners:
phoP
Two component system DNA-binding transcriptional dual regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription.
 0.999
colR
DNA-binding response regulator; Function of strongly homologous gene; regulator; Regulatory functions.
 
 
 0.876
dctB
C4-dicarboxylate transport sensor protein.
    
 
 0.845
phoB
Two-component system DNA-binding transcriptional dual response regulator PhoB; Function experimentally demonstrated in the studied strain; regulator; Centralintermediarymetabolism : Phosphorus compounds.
 
 
 0.825
ompR
Two-component system DNA-binding response transcriptional dual regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription.
 
 
 0.787
oprH
Outer membrane protein H1.
  
  
 0.783
PP_2347
DNA-binding response regulator.
 
 
 0.781
rlpA
RlpA-like lipoprotein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
  
 0.775
qseB
Two component system DNA-binding transcriptional activator QseB; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription.
 
 
 0.702
PP_4503
DNA-binding response regulator.
 
 
 0.660
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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