STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1198Transcriptional regulator, Cro/CI family (higA antitoxin like); Function of strongly homologous gene; regulator; Cellularprocesses : Toxin production and resistance. (98 aa)    
Predicted Functional Partners:
PP_1199
Toxin-antitoxin system, higB toxin like; Function of strongly homologous gene; enzyme; Cellularprocesses : Toxin production and resistance.
 
 
 0.986
PP_0274
Putative transcriptional regulator containing HTH domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Regulatory functions.
 
   
 0.889
PP_1585
Putative Antidote protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.883
PP_2938
Homologs of previously reported genes of unknown function.
   
  
 0.859
PP_4151
Excisionase domain protein.
  
  
 0.837
PP_1717
Homologs of previously reported genes of unknown function.
      
 0.835
PP_1716
Transcriptional regulator, Cro/CI family.
     
 0.834
PP_2499
Homologs of previously reported genes of unknown function.
      
 0.832
mqsR
Motility quorum-sensing regulator / GCU-specific mRNA interferase toxin; Function of homologous gene experimentally demonstrated in an other organism; regulator; Transcription : Degradation of RNA.
  
 
 0.761
yoeB
Toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor; Function of homologous gene experimentally demonstrated in an other organism; factor; Cellularprocesses : Toxin production and resistance.
 
   
 0.739
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.