Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1199Toxin-antitoxin system, higB toxin like; Function of strongly homologous gene; enzyme; Cellularprocesses : Toxin production and resistance. (111 aa)    
Predicted Functional Partners:
PP_1198
Transcriptional regulator, Cro/CI family (higA antitoxin like); Function of strongly homologous gene; regulator; Cellularprocesses : Toxin production and resistance.
 
 
 
 0.987
PP_4530
Homologs of previously reported genes of unknown function.
  
   
 0.900
PP_0274
Putative transcriptional regulator containing HTH domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Regulatory functions.
 
   
 0.897
PP_1586
Putative Killer protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.882
PP_1268
Putative HtrA suppressor protein sohA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.878
PP_3900
Hypothetical protein; Homologs of previously reported genes of unknown function.
  
   
 0.853
PP_5435
Homologs of previously reported genes of unknown function; Unknown function.
      
 0.839
PP_0770
PemI-like protein.
     
 0.828
PP_1716
Transcriptional regulator, Cro/CI family.
     
 0.824
PP_3032
DNA-binding protein Roi-related protein.
      
 0.815
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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