STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprDBasic-amino-acid specific porin OprD; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Porins. (421 aa)    
Predicted Functional Partners:
oprF
Outer membrane porin F.
  
   
 0.904
oprC
Outer membrane copper receptor OprC.
  
  
 0.869
oprH
Outer membrane protein H1.
   
  
 0.842
oprP
Porin P; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate.
  
   
 0.791
ampC
Beta-lactamase.
      
 0.751
oprN
Multidrug efflux RND outer membrane protein OprN.
      
 0.738
parC
DNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
      
 0.738
oprG
Outer membrane protein OprG.
      
 0.733
mexB
Multidrug resistance protein MexB.
      
 0.682
oprJ
Outer membrane protein OprJ.
      
 0.649
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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