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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1230Homologs of previously reported genes of unknown function. (502 aa)    
Predicted Functional Partners:
PP_1890
Type 1 pili chaperone protein FimC.
  
     0.741
fimD
Type 1 pili subunit FimD.
  
     0.720
PP_3145
Homologs of previously reported genes of unknown function.
  
    0.715
PP_1880
Outer membrane autotransporter.
  
     0.671
PP_5077
Homologs of previously reported genes of unknown function.
  
  
 0.642
PP_4851
Phosphate starvation-inducible protein, PSIF.
  
     0.614
ycgR
Flagellar brake protein YcgR; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Increasing levels of c-di-GMP lead to decreased motility (By similarity). Binds c-di-GMP with a dissociation constant of 165 nM. Binds 2 intercalated (c-di-GMP) dimers per subunit.
  
     0.584
PP_2105
Homologs of previously reported genes of unknown function.
  
    0.580
PP_2099
Homologs of previously reported genes of unknown function.
  
     0.549
nadA
Quinolinate synthase [4Fe-4S] cluster subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate; Belongs to the quinolinate synthase A family. Type 1 subfamily.
       0.528
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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