Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1262LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (315 aa)    
Predicted Functional Partners:
PP_1263
Putative Fusaric acid resistance protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.976
PP_1266
Putative Fusaric acid resistance protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.931
PP_4515
Transcriptional regulator, MarR family.
   
  
 0.861
PP_1265
Homologs of previously reported genes of unknown function.
       0.729
PP_3660
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.727
PP_5300
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.709
PP_2701
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.688
PP_4467
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.677
PP_1264
Putative Fusaric acid resistance protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.671
PP_2041
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.656
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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