STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1265Homologs of previously reported genes of unknown function. (66 aa)    
Predicted Functional Partners:
PP_5224
Homologs of previously reported genes of unknown function.
      
 0.930
PP_1263
Putative Fusaric acid resistance protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.808
PP_1264
Putative Fusaric acid resistance protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.807
PP_1266
Putative Fusaric acid resistance protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.768
pcm
Protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
      
 0.644
PP_1262
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.576
pobR
Transcriptional regulator; Function experimentally demonstrated in the studied species; regulator; Energy metabolism.
      
 0.463
pcaQ
Transcriptional regulator PcaQ; Belongs to the LysR transcriptional regulatory family.
      
 0.442
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.