Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_1289Conserved protein of unknown function, DUF328 family; Homologs of previously reported genes of unknown function; Unknown function; Belongs to the UPF0246 family. (259 aa)    
Predicted Functional Partners:
PP_1290
Polysaccharide deacetylase family protein; Function of strongly homologous gene; enzyme; Cell envelope.
       0.657
PP_1291
PhoH family protein.
       0.628
PP_0970
Cyanate MFS transporter.
  
    0.623
PP_3751
Putative Cyanate transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.623
PP_5277
Major facilitator family transporter.
  
    0.623
PP_0026
Putative cobalt/cadmium/zinc exporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Biologicalprocesses : Circulate.
       0.488
PP_1275
Homologs of previously reported genes of unknown function.
       0.488
ribD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
       0.474
moaD
Molybdopterin synthase small subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biosynthesisofcofactors,prostheticgroups,andcarriers : Molybdopterin.
 
    0.462
queF
NADPH-dependent 7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
       0.422
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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