Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PP_1290Polysaccharide deacetylase family protein; Function of strongly homologous gene; enzyme; Cell envelope. (375 aa)    
Predicted Functional Partners:
PP_1289
Conserved protein of unknown function, DUF328 family; Homologs of previously reported genes of unknown function; Unknown function; Belongs to the UPF0246 family.
       0.657
algK
Alginate biosynthesis protein AlgK; May be involved in the polymerization of mannuronate to alginate.
  
     0.602
PP_0149
Homologs of previously reported genes of unknown function.
  
     0.552
PP_0408
Homologs of previously reported genes of unknown function.
  
    0.490
PP_1291
PhoH family protein.
  
    0.477
PP_1442
Homologs of previously reported genes of unknown function; Unknown function.
 
  
 0.469
PP_2083
Putative Lipase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.460
PP_5293
Homologs of previously reported genes of unknown function.
  
     0.459
PP_4911
Homologs of previously reported genes of unknown function.
  
     0.453
PP_0033
Putative undecaprenyl-glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.438
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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