Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yhdXPutative amino acid ABC transporter - permease subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins. (392 aa)    
Predicted Functional Partners:
yhdY
Putative amino acid ABC transporter - membrane subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
 
0.999
yhdW
Putative amino-acid ABC transporter-binding protein YhdW; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.998
yhdZ
Putative amino acid ABC transporter - ATP-binding subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
 
 
 0.998
rbsA-I
Ribose ABC transporter - ATP-binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
   
  
 0.817
PP_3597
Amino-acid ABC transporter, ATP-binding protein; Function experimentally demonstrated in the studied strain; transporter.
 
  
 0.811
gltK
Glutamate / aspartate ABC transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
 
 
0.799
rbsC
D-ribose ABC transporter - permease subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Energy metabolism; Belongs to the binding-protein-dependent transport system permease family.
      
 0.716
glnQ
Glutamine transport ATP-binding protein GlnQ.
 
  
 0.715
gltL
Glutamate / aspartate ABC transporter - ATP binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Aminoacidbiosynthesis : Aspartate family.
 
  
 0.708
PP_5023
Amino acid ABC transporter, permease protein.
 
 
0.645
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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