STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1353Homologs of previously reported genes of unknown function. (282 aa)    
Predicted Functional Partners:
PP_4707
OsmY-related protein.
   
  
 0.839
PP_4855
Osmotically-inducible lipoprotein OsmE.
   
  
 0.835
mscMB
Mechanosensitive channel of miniconductance; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
      
 0.815
cmpX
CmpX protein.
   
  
 0.654
mscL
Large-conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
     
 0.642
PP_1352
UPF0234 protein PP_1352; Belongs to the UPF0234 family.
       0.586
oprE
Outer-membrane porin E; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Porins.
      
 0.520
PP_5256
Cyclic nucleotide-binding protein.
 
  
0.519
oprC
Outer membrane copper receptor OprC.
      
 0.512
mdfA
Putative multidrug efflux MFS transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
       0.495
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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