STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1418Putative Tricarboxylate transport protein TctC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (326 aa)    
Predicted Functional Partners:
PP_1416
Putative Tricarboxylate transport protein TctA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.979
PP_1417
Putative Tricarboxylate transport protein TctB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.978
PP_2418
Putative cobalamin ABC transporter, periplasmic; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
   
 0.855
opdH
Tricarboxylate-specific outer membrane porin; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Porins.
  
    0.840
PP_1415
Putative membrane associated enzyme subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.824
gabP-II
Gamma-aminobutyrate permease; Function of homologous gene experimentally demonstrated in an other organism; transporter.
      
 0.757
PP_1421
Putative Sensor histidine kinase TctE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.713
aruC
Acetylornithine aminotransferase 2; Function experimentally demonstrated in the studied strain; enzyme; Aminoacidbiosynthesis : Glutamate family; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
      
 0.647
benR
BenABC operon transcriptional activator; Function experimentally demonstrated in the studied species; regulator; Energy metabolism.
   
  
 0.643
PP_1478
Putative Xenobiotic reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
  
 0.590
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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