STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprB-IICarbohydrate-selective porin; Function experimentally demonstrated in the studied strain; transporter. (444 aa)    
Predicted Functional Partners:
gcd
Quinoprotein glucose dehydrogenase; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Sugars.
 
  
 0.819
PP_4770
Homologs of previously reported genes of unknown function.
  
     0.654
PP_0050
Homologs of previously reported genes of unknown function.
  
     0.649
oprB-III
Carbohydrate-selective porin; Function of strongly homologous gene; transporter; Transport and binding proteins.
  
  
 
0.640
oprF
Outer membrane porin F.
     
 0.625
PP_1369
Homologs of previously reported genes of unknown function.
  
     0.601
quiA
Quinate dehydrogenase (quinone); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
  
     0.565
oprB-I
Carbohydrate-selective porin; Function experimentally demonstrated in the studied strain; transporter.
  
  
0.552
PP_0806
Putative Surface adhesion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.492
PP_4570
Homologs of previously reported genes of unknown function.
  
     0.489
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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