Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oprB-IICarbohydrate-selective porin; Function experimentally demonstrated in the studied strain; transporter. (444 aa)    
Predicted Functional Partners:
gcd
Quinoprotein glucose dehydrogenase; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Sugars.
 
  
 0.811
PP_4770
Homologs of previously reported genes of unknown function.
  
     0.654
PP_0050
Homologs of previously reported genes of unknown function.
  
     0.649
PP_1369
Homologs of previously reported genes of unknown function.
  
     0.601
quiA
Quinate dehydrogenase (quinone); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
     0.569
gtsB
Mannose/glucose ABC transporter, permease protein; Function experimentally demonstrated in the studied strain; transporter; Transport and binding proteins.
  
  
 0.527
PP_0806
Putative Surface adhesion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.491
PP_4570
Homologs of previously reported genes of unknown function.
  
     0.489
lpxOA
Fe(2+)/alpha-ketoglutarate-dependent dioxygenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Cell envelope.
  
     0.485
PP_1269
Universal stress protein family.
  
     0.480
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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