Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_1446TonB-dependent receptor. (680 aa)    
Predicted Functional Partners:
PP_2676
Putative Periplasmic binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.970
PP_2662
Homologs of previously reported genes of unknown function.
     
 0.862
PP_3654
Leucine-responsive regulatory protein; Function of homologous gene experimentally demonstrated in an other organism; regulator.
      
 0.655
PP_2420
Outer membrane ferric siderophore receptor.
  
  
 0.635
PP_1847
Putative TonB-dependent ferric siderophore receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor; Transport and binding proteins.
  
  
 0.606
tolA
Colicin S4 and filamentous phage transport system; Function experimentally demonstrated in the studied strain; transporter; Cellenvelope : Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides.
  
 
 0.565
PP_4994
Homologs of previously reported genes of unknown function.
  
 
 0.565
tonB
Protein TonB.
  
 
 0.565
PP_3612
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor; Transport and binding proteins.
  
  
 0.542
PP_1447
Homologs of previously reported genes of unknown function.
       0.530
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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