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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1449Homologs of previously reported genes of unknown function. (1508 aa)    
Predicted Functional Partners:
PP_1450
Putative Activation/secretion protein, TPS family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.998
tcdA
tRNA threonylcarbamoyladenosine dehydratase (t(6)A37 dehydratase); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Proteinsynthesis : tRNA and rRNA base modification.
      
 0.768
PP_4312
Homologs of previously reported genes of unknown function.
  
     0.760
PP_1567
Capsid protein.
 
     0.697
PP_3399
Minor curlin subunit CsgB, nucleation component of curlin monomers; Function of strongly homologous gene; factor; Cell envelope.
 
     0.656
PP_3865
Putative Phage tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.610
PP_4068
Transcriptional regulator, Cro/CI family.
  
     0.589
PP_1880
Outer membrane autotransporter.
  
  
 0.576
PP_0573
Homologs of previously reported genes of unknown function.
 
 
 0.555
PP_2565
Putative helicase, UvrD/REP family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; DNA metabolism.
 
     0.547
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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