STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1450Putative Activation/secretion protein, TPS family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (565 aa)    
Predicted Functional Partners:
PP_1449
Homologs of previously reported genes of unknown function.
 
 
 0.969
fimD
Type 1 pili subunit FimD.
  
  
 0.850
gspG
Putative protein secretion protein for export; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
   
  
 0.835
PP_1888
Fimbrial protein.
   
  
 0.768
PP_4924
Serine protease, subtilase family.
  
  
 0.745
PP_1890
Type 1 pili chaperone protein FimC.
  
  
 0.680
exbD
TonB-gated outer membrane transporter - gating inner membrane protein; Function of homologous gene experimentally demonstrated in an other organism; membrane component; Transportandbindingproteins : Cations and iron carrying compounds.
     
 0.670
PP_2361
Putative chaperone protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
  
 0.661
PP_4526
Putative MFS superfamily transporter precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
  
   
 0.591
exbB
Biopolymer transport protein ExbB.
  
  
 0.569
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.