Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PP_1451Homologs of previously reported genes of unknown function. (184 aa)    
Predicted Functional Partners:
PP_2320
Homologs of previously reported genes of unknown function.
 
  
 0.802
PP_1452
MutT/nudix family protein.
       0.761
nudL
Putative NUDIX hydrolase with low 3-phosphohydroxypyruvate phosphatase activity; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme; Biologicalprocesses : Maintain.
       0.730
PP_1455
Homologs of previously reported genes of unknown function.
       0.687
purT
Phosphoribosylglycinamide formyltransferase 2; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family.
 
     0.653
PP_1236
Putative Glycine cleavage system transcriptional repressor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   
 0.623
PP_1897
DNA internalization-related competence protein ComEC/Rec2.
     
 0.594
PP_0696
Homologs of previously reported genes of unknown function.
     
 0.578
PP_2305
Homologs of previously reported genes of unknown function.
      
 0.578
PP_2673
Pentapeptide repeat family protein.
      
 0.575
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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