Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1474Homologs of previously reported genes of unknown function. (291 aa)    
Predicted Functional Partners:
PP_1475
CAIB/BAIF family protein; Belongs to the CoA-transferase III family.
      0.762
PP_4979
Putative Periplasmic binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.620
PP_4270
Homologs of previously reported genes of unknown function.
  
     0.596
PP_0693
Homologs of previously reported genes of unknown function.
  
    0.576
PP_4291
Homologs of previously reported genes of unknown function.
  
     0.529
PP_4293
Homologs of previously reported genes of unknown function.
  
     0.529
PP_1476
Homologs of previously reported genes of unknown function.
       0.505
recJ
ssDNA-specific exonuclease RecJ; Function of homologous gene experimentally demonstrated in an other organism; enzyme; DNAmetabolism : DNA replication, recombination, and repair.
       0.495
PP_3399
Minor curlin subunit CsgB, nucleation component of curlin monomers; Function of strongly homologous gene; factor; Cell envelope.
  
     0.492
PP_4955
Homologs of previously reported genes of unknown function.
  
     0.467
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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