Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_1478Putative Xenobiotic reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (368 aa)    
Predicted Functional Partners:
PP_0241
Transporter.
   
  
 0.704
PP_3209
Isoxanthopterin deaminase.
      
 0.701
PP_1418
Putative Tricarboxylate transport protein TctC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
  
 0.657
sprT
Conserved protein of unknown function, SprT family; Homologs of previously reported genes of unknown function; Unknown function; Belongs to the SprT family.
   
  
 0.653
def-II
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
      
 0.632
PP_3959
Voltage-gated chloride channel family protein.
     
 0.618
curA
NADPH-dependent curcumin/dihydrocurcumin reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Unknownfunction : Enzymes of unknown specificity.
  
  
 0.609
PP_1476
Homologs of previously reported genes of unknown function.
  
    0.546
oguA
Hydroxydechloroatrazine ethylaminohydrolase; Function of strongly homologous gene; enzyme; Biologicalprocesses : Scavenge (Catabolism).
      
 0.545
recJ
ssDNA-specific exonuclease RecJ; Function of homologous gene experimentally demonstrated in an other organism; enzyme; DNAmetabolism : DNA replication, recombination, and repair.
       0.532
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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