STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1480Homologs of previously reported genes of unknown function. (84 aa)    
Predicted Functional Partners:
hicB
HicB protein.
 
   
 0.987
PP_3900
Hypothetical protein; Homologs of previously reported genes of unknown function.
  
   
 0.898
mqsA
Antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor; Function of homologous gene experimentally demonstrated in an other organism; regulator; Regulatory functions.
  
   
 0.875
PP_4530
Homologs of previously reported genes of unknown function.
  
   
 0.864
PP_0274
Putative transcriptional regulator containing HTH domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Regulatory functions.
  
   
 0.855
res
Conserved protein of unknown function; Toxic component of a type II toxin-antitoxin (TA) system. Expression in E.coli inhibits cell growth. In vivo it is probably neutralized by cognate antitoxin Xre; this has not been shown upon expression in E.coli. Probably depletes intracellular NAD(+) (By similarity); Belongs to the MbcT/ParT/Res family.
      
 0.835
PP_1586
Putative Killer protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.823
PP_3899
Conserved protein of unknown function, hicB family; Homologs of previously reported genes of unknown function; Unknown function.
 
   
 0.818
PP_0770
PemI-like protein.
  
  
 0.809
PP_1199
Toxin-antitoxin system, higB toxin like; Function of strongly homologous gene; enzyme; Cellularprocesses : Toxin production and resistance.
  
  
 0.795
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.