Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ydcVPolyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins. (268 aa)    
Predicted Functional Partners:
ydcU
Polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
 0.998
ydcT
Predicted polyamine ABC transporter, ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins; Belongs to the ABC transporter superfamily.
 
 0.997
PP_3815
Polyamine ABC transporter, permease protein.
 
 0.982
spuG
Spermidine/putrescine ABC transporter - inner membrane subunit; Function experimentally demonstrated in the studied genus; transporter; Centralintermediarymetabolism : Polyamine biosynthesis.
 
 0.981
potF-IV
Putrescine-binding periplasmic protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 0.971
PP_2195
Putrescine-binding periplasmic protein.
 
 0.965
potF-III
Putrescine-binding periplasmic protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 0.961
PP_3719
Putrescine-binding periplasmic protein.
 
 0.955
ydcS
Polyamine ABC transporter, periplasmic polyamine-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
 
 
 0.953
spuE
Spermidine/putrescine ABC transporter - periplasmic subunit; Function experimentally demonstrated in the studied genus; transporter; Centralintermediarymetabolism : Polyamine biosynthesis.
 
 0.953
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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