Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ydcUPolyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins. (303 aa)    
Predicted Functional Partners:
ydcV
Polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
 0.998
ydcT
Predicted polyamine ABC transporter, ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins; Belongs to the ABC transporter superfamily.
 
 0.997
PP_3816
Polyamine ABC transporter, permease protein.
 
 0.957
PP_0414
Polyamine ABC transporter, permease protein.
 
 0.941
ydcS
Polyamine ABC transporter, periplasmic polyamine-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
 
  
 0.922
spuH
Spermidine/putrescine ABC transporter - permease subunit; Function experimentally demonstrated in the studied genus; transporter; Centralintermediarymetabolism : Polyamine biosynthesis.
 
0.894
patD
Medium chain aldehyde dehydrogenase; Function experimentally demonstrated in the studied species; enzyme; Energymetabolism : Amino acids and amines; Belongs to the aldehyde dehydrogenase family.
 
     0.857
PP_3817
Polyamine ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.822
csgG
Curli secretion and assembly complex lipoprotein; Function of homologous gene experimentally demonstrated in an other organism; lipoprotein; Transport and binding proteins.
      
 0.816
ompQ
Outer membrane pyoverdine efflux protein; Function of strongly homologous gene; transporter; Transport and binding proteins.
      
 0.746
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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