STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1487Homologs of previously reported genes of unknown function. (226 aa)    
Predicted Functional Partners:
PP_1491
CheW domain protein.
  
    0.511
PP_1488
Methyl-accepting chemotaxis transducer.
       0.489
PP_1489
CheW domain protein.
       0.489
wspC
Probable biofilm formation methyltransferase WspC; Involved in biofilm formation.
       0.485
ydcS
Polyamine ABC transporter, periplasmic polyamine-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transport and binding proteins.
  
    0.480
htpX
Protease HtpX; Belongs to the peptidase M48B family.
   
    0.457
PP_1492
Sensor histidine kinase/response regulator.
       0.454
PP_3169
Homologs of previously reported genes of unknown function.
  
     0.443
cheBC
Chemotaxis response regulator protein-glutamate methylesterase of group 3 operon; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid.
       0.442
PP_4504
Homologs of previously reported genes of unknown function.
   
  
 0.411
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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