STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1503Homologs of previously reported genes of unknown function. (156 aa)    
Predicted Functional Partners:
PP_1502
OmpA family protein.
 
 
 0.937
PP_2189
Homologs of previously reported genes of unknown function.
  
  
 0.658
tolA
Colicin S4 and filamentous phage transport system; Function experimentally demonstrated in the studied strain; transporter; Cellenvelope : Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides.
  
   0.644
PP_4198
OmpA family protein.
 
 
 0.628
PP_4856
Ferritin, Dps family protein.
 
    0.614
oprF
Outer membrane porin F.
 
 
 0.606
PP_1357
Homologs of previously reported genes of unknown function; Unknown function.
  
     0.601
PP_4168
Homologs of previously reported genes of unknown function.
  
     0.596
PP_4994
Homologs of previously reported genes of unknown function.
    
   0.550
tonB
Protein TonB.
    
   0.550
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.